Dlugosch Lab @ UArizona

Current citations also available at Google Scholar.
Dlugosch Lab members are indicated in bold.
Undergraduate authors are indicated by (*).

Available Preprints

Veldhuisen LN, Zepeda V, Enquist BJ, Dlugosch KM (2024) Rare species do not disproportionately contribute to phylogenetic diversity in a subalpine plant community. bioRxiv 2024.11.01.621409 (https://doi.org/10.1101/2024.11.01.621409)

Northing PC, Pelosi JA, Venable DL, Dlugosch KM (2024) Chromosome-scale reference genome of Pectocarya recurvata, a species with one of the smallest genome sizes in Boraginaceae. bioRxiv 2024.10.14.617638 (https://doi.org/10.1101/2024.10.14.617638)

Veldhuisen LN, Enquist BJ, Dlugosch KM (2023) Phylogenetic diversity of flowering plants declines throughout the growing season across a subalpine elevational gradient. bioRxiv, 2023.11. 06.565878 (https://doi.org/10.1101/2023.11.06.565878)

Cang FA, Welles SR, Wong J*, Ziaee M*, Dlugosch KM (2022) Ecological effects of genome size in yellow starthistle (Centaurea solstitialis) vary between invaded and native ranges. bioRxiv 2022.10.25.513778 (https://doi.org/10.1101/2022.10.25.513778)

Braasch JE, Johnson MA*, Harrison SP, Dlugosch KM (2019) Introduced species dominate different responses of grassland communities to climate change on serpentine and nonserpentine soils. bioRxiv 844886 (https://doi.org/10.1101/844886)

Kaczowka A, Lu Irving P, Baltrus BA, Dlugosch KM (2017) Variation in the oxidative burst in response to wounding and bacterial infection among native and invading genotypes of yellow starthistle (Centaurea solstitialis). bioRxiv 156083 (https://doi.org/10.1101/156083)

Publications

Reatini B, Pelosi JA, Cang FA, Jiang Q, McKibben MTW, Barker MS, Rieseberg LH, Dlugosch KM. Chromosome-scale reference genome and RAD-based genetic map of yellow starthistle (Centaurea solstitialis) reveal putative structural variation and QTLs associated with invader traits. bioRxiv 2022.09.28.509992 (https://doi.org/10.1101/2022.09.28.509992) In Press at Genome Biology & Evolution

Milici VR, Abiven S, Bauser HH, Bishop LG*, Bland RGW, Chorover J, Dontsova KM, Friedman L*, Rusek-Peterson MJ, Saleska S, Dlugosch KM (2024) The effects of plant-microbe-environment interactions on weathering patterns in a granular basalt. Geobiology, 22: e70004. https://doi.org/10.1111/gbi.70004

Berlow M, Mesa JM, Creek M*, Duarte J*, Carpenter E, Phinizy B, Andonian K, Dlugosch KM (2024) Plant G x Microbial E: Plant genotype interaction with soil bacterial community shapes rhizosphere composition during invasion. Microbial Ecology 87: 113 (https://doi.org/10.1007/s00248-024-02429-5)
(Earlier version at bioRxiv 2024.04.19.590333; https://doi.org/10.1101/2024.04.19.590333)

Cang FA, Welles SR, Wong J*, Ziaee M*, Dlugosch KM (2024) Genome size variation and evolution during invasive range expansion in an introduced plant. Evolutionary Applications 17 (1), e13624 (https://doi.org/10.1111/eva.13624)

Maitner BS, Park DS, Enquist BE, Dlugosch KM (2022) Both source and recipient range phylogenetic community structure can predict the outcome of avian introductions. Ecography e05934 (https://doi.org/10.1111/ecog.05934)
(Earlier version at bioRxiv 2021.05.17.444023; doi: https://doi.org/10.1101/2021.05.17.444023)

Dant AJ, Burnett AD, Veldhuisen LN, Dlugosch KM (2021) Review of: Urban Evolutionary Biology. The Quarterly Review of Biology 96 (3): 221-222 (https://doi.org/10.1086/716115)

Maitner BS, Park DS, Enquist BE, Dlugosch KM (2021) Where we’ve been and where we’re going: the importance of source communities in predicting establishment success from phylogenetic relationships. Ecography e05406 (https://doi.org/10.1111/ecog.05406)

Marx HE, Jorgensen SA, Wisely E, Li Z, Dlugosch KM, Barker MS (2021) Pilot RNA‐seq data from 24 species of vascular plants at Harvard Forest. Applications in Plant Sciences 9 (2), e11409 (https://doi.org/10.1002/aps3.11409)
(Earlier version at bioRxiv: 2020.03.31.018945; doi: https://doi.org/10.1101/2020.03.31.018945)

Marx HE, Scheidt S, Barker MS, Dlugosch KM (2020) TagSeq for gene expression in non‐model plants: A pilot study at the Santa Rita Experimental Range NEON core site. Applications in Plant Sciences. 8( 11): e11398 (https://doi.org/10.1002/aps3.11398)
(Earlier version at bioRxiv: 2020.04.04.025791; doi: https://doi.org/10.1101/2020.04.04.025791)

Mesa JM, Dlugosch KM (2020) The evolution of invasiveness: a mechanistic view of trade‐offs involving defenses. American Journal of Botany 107: 953-956 (https://doi.org/10.1002/ajb2.1507)

Braasch JE, Barker BS, Dlugosch KM (2019) Expansion history and environmental suitability shape effective population size in a plant invasion. Molecular Ecology 28: 2546–2558 (https://doi.org/10.1111/mec.15104)
(Earlier version at bioRxiv 416693. https://doi.org/10.1101/416693)

Lu-Irving P, Harencar J, Sounart H*, Welles SR, Swope SM, Baltrus DA, Dlugosch KM (2019) Native and invading yellow starthistle (Centaurea solstitialis) microbiomes differ in composition and diversity of bacteria. mSphere: 4 (2) e00088–19 (https://doi.org/10.1128/msphere.00088-19)
(Earlier version at bioRxiv 119917; doi: https://doi.org/10.1101/119917)

Barker BS, Cocio JE*, Anderson SR, Braasch J, Cang FA, Gillette HD*, Dlugosch KM (2019) Potential limits to the benefits of admixture during biological invasion. Molecular Ecology 28: 100–113 (https://doi.org/10.1111/mec.14958)
(Earlier version at bioRxiv 139709; doi: https://doi.org/10.1101/139709)

Fitzpatrick C^, Lu-Irving P^, Copeland J, Guttman D, Wang P, Baltrus DA, Dlugosch KM, Johnson M (2018) Chloroplast sequence variation and the efficacy of peptide nucleic acids for blocking host amplification in plant microbiome studies. Microbiome 6:144 ^co-first authors (https://doi.org/10.1186/s40168-018-0534-0)

Welles SR, Dlugosch KM (2018) Population genomics of colonization and invasion. In “Population Genomics Concepts, Strategies, and Approaches” ed. Rajora O. Springer (https://doi.org/10.1007/13836_2018_22)

Lu-Irving P, Marx HE, Dlugosch KM (2018) Leveraging contemporary species introductions to test phylogenetic hypotheses of trait evolution. Current Opinion in Plant Biology 42, 95–102 (https://doi.org/10.1016/j.pbi.2018.04.011)

Barker BS, Andonian K, Swope SM, Luster DG, Dlugosch KM (2017) Population genomic analyses reveal a history of range expansion and trait evolution across the native and invaded range of yellow starthistle (Centaurea solstitialis). Molecular Ecology 26 (4), 1131–1147 (https://doi.org/10.1111/mec.13998)

Colautti RI, Alexander JM, Dlugosch KM, Keller SR, Sultan SE (2017) Invasions and extinctions through the looking glass of evolutionary ecology. Philosophical Transactions of the Royal Society B 372: 20160031 (https://doi.org/10.1098/rstb.2016.0031)

Barrett SCH, Colautti RI, Dlugosch KM, Rieseberg LH (eds) (2017) Invasion Genetics: The Baker and Stebbins Legacy. John Wiley & Sons. ISBN: 978-1-118-92216-3 (https://www.wiley.com/en-us/Invasion+Genetics%3A+The+Baker+and+Stebbins+Legacy-p-9781118922163)

• Includes: Dlugosch KM, Parker IM (2017) Introduction: Evolutionary Ecology. pp 21–24.

Dlugosch KM, Cang FA, Barker BS, Andonian K, Swope SM, Rieseberg LH (2015) Evolution of invasiveness through increased resource use in a vacant niche. Nature Plants 1: 15066 (https://doi.org/10.1038/nplants.2015.66)  UA News Article  BYU Radio interview

Dlugosch KM, Anderson SR, Braasch J, Cang FA, Gillette HD* (2015) The devil is in the details: genetic variation in introduced populations and its contributions to invasion. Molecular Ecology 24: 2095–2111 (https://doi.org/10.1002/9781119072799.ch14)

Li MY, Dlugosch KM, Enquist BJ (2015) Novel spatial analysis methods reveal scale-dependent spread and its limiting factors in invasive Sahara mustard. Ecography 38: 311–320 (https://doi.org/10.1111/ecog.00722)

Dlugosch KM^, Lai Z^, Bonin A, Hierro J, Rieseberg LH (2013) Allele identification for transcriptome-based population genomics in the invasive plant Centaurea solstitialis. G3 3: 359–367 ^co-first authors (https://doi.org/10.1534/g3.112.003871)

• Software download: AllelePipe

• Software download: SnoWhite

Lai Z, N Kane, A Kozik, K Hodgins, KM Dlugosch, M Barker, M Matvienko, Q Yu, K Turner, S Pearl, G Bell, Y Zou, C Grassa, A Guggisberg, K Adams, J Anderson, D Horvath, Kesseli, J Burke, R Michelmore, LH Rieseberg (2012) Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. American Journal of Botany 99: 209–218 (https://doi.org/10.3732/ajb.1100313)

Dlugosch KM, Bonin A (2012) Allele identification in assembled genomic sequence datasets. In “Data Production and Analysis in Population Genomics” eds. Bonin A, Pompanon F. Methods in Molecular Biology Series, Humana Press (https://doi.org/10.1007/978-1-61779-870-2_12)

Mayrose M, Kane NC, Mayrose I, Dlugosch KM, Rieseberg LH (2011) Increased growth in sunflower correlates with reduced defenses and altered gene expression in response to biotic and abiotic stress. Molecular Ecology 20: 4683–4694 (https://doi.org/10.1111/j.1365-294X.2011.05301.x)

Barker MS, Dlugosch KM, Dinh L, Challa RS, Kane NC, King MG, Rieseberg LH (2010) EvoPipes.net: bioinformatic tools for ecological and evolutionary genomics. Evolutionary Bioinformatics: 6 143–149 (https://doi.org/10.4137/EBO.S5861)

Dlugosch KM, Barker MS, Rieseberg LH (2010) NU-IN: Nucleotide evolution and input module for the EvolSimulator genome simulation platform. BMC Research Notes 3: 217 (https://doi.org/10.1186/1756-0500-3-217)

• Software download: NU-IN

Stewart CN Jr., Tranel PJ, Horvath DP, Anderson JV, Rieseberg LH, Westwood JH, Mallory-Smith CA, Zapiola ML, Dlugosch KM (2009) Evolution of weediness and invasiveness: charting the course for weed genomics. Weed Science 57: 451–462 (https://doi.org/10.1614/WS-09-011.1)

Barker MS^, Dlugosch KM^, Reddy ACC, Amyotte SN, Rieseberg LH (2009) SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses. Bioinformatics 25: 535–536. ^co-first authors (https://doi.org/10.1093/bioinformatics/btp011)

• Software download: SCARF

Dlugosch KM, Hays CG (2008) Genotypes on the move: some things old and some things new shape the genetics of colonization during species invasions. Molecular Ecology 17: 4583–4585 (https://doi.org/10.1111/j.1365-294X.2008.03932.x)

Dlugosch KM, Parker IM (2008) Invading populations of an ornamental shrub show rapid life history evolution despite genetic bottlenecks. Ecology Letters 11(7): 701–709 (https://doi.org/10.1111/j.1461-0248.2008.01181.x)

Dlugosch KM, Whitton J (2008) Can we stop transgenes from taking a walk on the wild side? Molecular Ecology 17(5): 1167–1169 (https://doi.org/10.1111/j.1365-294X.2008.03663.x)

Whitton J, Dlugosch KM, Sears CJ (2008) Molecular and morphological evidence for and against gene flow in sympatric apomicts of the North American Crepis agamic complex (Asteraceae). Canadian Journal of Botany 86(8): 877–885 (https://doi.org/10.1139/B08-071)

Dlugosch KM, Parker IM (2008) Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions. Molecular Ecology 17 (1): 431–449 Featured on Faculty of 1000 (https://doi.org/10.1111/j.1365-294X.2007.03538.x)

Parker IM, Cuevas Garcia E, Dlugosch KM, Holloran P, Swope SM, Hulvey KB, Clark R (2007) Invasions as a tool for basic research. Conservation Biology 21 (5): 1376–1377 (https://doi.org/10.1111/j.1523-1739.2007.00786.x)

Dlugosch KM, Parker IM (2007) Molecular and life history trait variation across the native range of the invasive species Hypericum canariense: evidence for ancient patterns of colonization via pre-adaptation? Molecular Ecology 16 (20): 4269–4283 (https://doi.org/10.1111/j.1365-294X.2007.03508.x)

Dlugosch KM (2005) Understory community changes associated with English ivy invasion in Seattle’s urban parks. Northwest Science 79 (1): 52–60 (https://escholarship.org/uc/item/6sv7f3fc)

Schultz CB, Dlugosch KM (1999) Nectar and hostplant scarcity limit populations of an endangered Oregon butterfly. Oecologia 119 (2): 231–238 (https://doi.org/10.1007/s004420050781)

Dlugosch K, del Moral R (1999) Vegetational heterogeneity along elevational gradients. Northwest Science 73 (1): 12–18 (https://hdl.handle.net/2376/1164)